Pixelator Parameters

An overview of all parameters available in the nf-core/pixelator pipeline can be found in the parameter documentation on nf-co.re.

The parameters are grouped into sections based on whether it affects the input/output or a specific step of the nf-core/pixelator pipeline.

The documentation provides information about each parameter, including whether it is required, the expected data type, and its purpose. If you are unsure about the meaning of a particular parameter, you can click the "Help text" button to view an extended description.

The default parameters have been chosen to work well with most proximty network or molecular pixelation experiments. If you need help in picking the best configure the parameters for your specific experiment, please contact our Support team.