Installation of pixelatorES

Running PixelatorES as part of the nf-core/pixelator pipeline

If you are running the nf-core/pixelator pipeline (version >= 2.1) with Proxiome Network Assay data. The Proxiome Summary report will be automatically generated as part of the pipeline run. You do not need to install pixelatorES separately.

The guide below is useful if you want to install PixelatorES as an R package and manually run reports.

An easy way to install the pixelatorES package is to use pak.

install.packages("pak")
pak::pak("PixelgenTechnologies/pixelatorES")

For More Advanced R Users

If you need more information about how to install PixelatorES, e.g. how to install it into a conda environment, or how to solve issues with running on ARM chipsets (e.g. the Apple M series processors) refer to the pixelatorR instructions as things apply here. Just replace pixelatorR with pixelatorES.