Quick Start with MPX Analysis

Step by step tutorials

Make here a table with all the links to the different tutorials.

1. Data Handling

   1. Loading data
   2. Aggregating data
   3. Save data

2. Quality Control

   1. Component filtering
   2. Removing outliers

3. Abundance Normalization

   1. The dsb normalization
   2. Normalize MPX

4. Data Integration

   1. Harmonizing data

5. Cell Annotation

   1. Clustering and dimensionality reduction
   2. Annotation by differential protein abundance
   3. Annotation by marker gating

6. Spatial Analyses

   1. Differential polarity analysis
   2. Differential colocalization analysis

7. 2D Cell Visualization

   1. 2D graph visualization

8. 3D Cell Visualization